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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34822851_34824876_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34822851 - 34824876
Intron Length:
2026

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAATGTTT
5'SS Class:
major
3'SS Sequence:
TTCCATTTGTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTTATTTCAATT
Flanking Amino Acid:
AHQEDEQVELDNVSHASVAV
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
74.1
36.8
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
72.2
0.5
1
73
37
Minor 5ss
42.9
-0.8
3.4
61.4
45.4
Minor BPS
62.7
0.48
1.5
80.28
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005319
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005518
34814087 - 34828945
14859