About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34825037_34826080_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34825037 - 34826080
Intron Length:
1044

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
CCTTGTCTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAAACAT
U12 Branch Point Sequence:
CCTTGTCTGACA
Flanking Amino Acid:
SSRRSSISSHESFSVLDSGI
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
83.5
27.8
Major BPS
54.4
0.11
1
61.4
34.3
Major PPT
72.5
0.51
1
67.9
37.7
Minor 5ss
38.7
-1.3
3.4
53.7
43.8
Minor BPS
46.2
-0.3
2.1
58.23
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005319
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005518
34814087 - 34828945
14859