About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34826645_34827597_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34826645 - 34827597
Intron Length:
953

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTGGTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
CAGTCCTTAACA
Flanking Amino Acid:
VQVLLWSEVKDIQDIAVYKS
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
81.2
33.8
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
82.3
0.73
0.9
76.3
37.7
Minor 5ss
49.1
-0.1
3
73.2
43.7
Minor BPS
78.5
0.89
1.2
76.51
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005319
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005518
34814087 - 34828945
14859