About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34827687_34827910_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34827687 - 34827910
Intron Length:
224

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
GCTTTGCTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TCCTGGTCAACG
Flanking Amino Acid:
SLSFPKLLYLTEHYVVTWTE
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1.2
86.9
30.1
Major BPS
83
0.82
0.8
82
24.9
Major PPT
79.7
0.67
0.9
72.9
37.4
Minor 5ss
37.6
-1.4
3
50.6
39.2
Minor BPS
42.3
-0.7
2.5
50.75
49.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005319
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005518
34814087 - 34828945
14859