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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34838655_34840471_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34838655 - 34840471
Intron Length:
1817

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CTGTGTAATCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TGCTAATTAATG
Flanking Amino Acid:
TVSHMYADIKCQKISPEGKA
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
79.7
28.2
Major BPS
83
0.82
0.8
82
24.9
Major PPT
64.1
0.32
1
55.8
43.7
Minor 5ss
34.4
-1.8
3.3
44.6
43.6
Minor BPS
51.1
-0.1
1.9
58.4
43.1

Associated Gene:

Gene:
GTF2H1
Ensembl Gene ID:
ENSAPLG00000005620
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005841
34837833 - 34855231
17399