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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34840665_34843088_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34840665 - 34843088
Intron Length:
2424

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGAGA
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTTTACCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
ATTCTTTTACCA
Flanking Amino Acid:
KANKELEEKNRMLQEDPVLF
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
72
39.3
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
80.5
0.69
0.9
74.5
39.5
Minor 5ss
31
-2.2
3.2
40
45.7
Minor BPS
59.5
0.29
1.6
70.42
35.8

Associated Gene:

Gene:
GTF2H1
Ensembl Gene ID:
ENSAPLG00000005620
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005841
34837833 - 34855231
17399