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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34850111_34850984_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34850111 - 34850984
Intron Length:
874

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTCTCTCTCACA
Flanking Amino Acid:
TIALNLKKSDRYYHGPTPIQ
Intron Amino Acid Position:
390

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.1
1.11
0.7
89.3
17.5
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
84.5
0.78
0.7
79.6
25.9
Minor 5ss
39.5
-1.2
2.8
49
47.2
Minor BPS
53.2
0.09
2.1
71.45
41.1

Associated Gene:

Gene:
GTF2H1
Ensembl Gene ID:
ENSAPLG00000005620
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005841
34837833 - 34855231
17399