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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34851103_34851914_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34851103 - 34851914
Intron Length:
812

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGAAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
ATGGTCTGAAAT
Flanking Amino Acid:
MEAYVPKLTQVLSSGDATST
Intron Amino Acid Position:
430

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
71.3
40.1
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
87.7
0.85
0.6
85.5
21.9
Minor 5ss
37.7
-1.4
3.1
47.3
48.3
Minor BPS
51.2
0.12
1.7
68.09
42.6

Associated Gene:

Gene:
GTF2H1
Ensembl Gene ID:
ENSAPLG00000005620
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005841
34837833 - 34855231
17399