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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34852006_34853455_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34852006 - 34853455
Intron Length:
1450

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTAAGCACT
5'SS Class:
major
3'SS Sequence:
TTTCCCGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTTGAGTGAAGT
Flanking Amino Acid:
MQGGTQQAINQMVPNDVQSE
Intron Amino Acid Position:
460

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.2
0.36
1.4
66.6
44.7
Major BPS
84.4
0.85
1
84
34.5
Major PPT
82.6
0.73
0.8
76.8
31.7
Minor 5ss
43.9
-0.7
2.9
63.8
40.3
Minor BPS
43
-0.4
2.5
69.51
46.9

Associated Gene:

Gene:
GTF2H1
Ensembl Gene ID:
ENSAPLG00000005620
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005841
34837833 - 34855231
17399