About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34883782_34884513_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34883782 - 34884513
Intron Length:
732

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
GGTCATTTGATA
Flanking Amino Acid:
LRTPKITSGKDYSVTAHSKL
Intron Amino Acid Position:
222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.9
28.7
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
85.9
0.81
0.8
80.7
31.4
Minor 5ss
37.5
-1.4
2.8
51.6
44.9
Minor BPS
49.5
-0
1.4
58.22
34.6

Associated Gene:

Gene:
LDHA
Ensembl Gene ID:
ENSAPLG00000005918
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006177
34880214 - 34887289
7076