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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34884688_34885155_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34884688 - 34885155
Intron Length:
468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTCTC
5'SS Class:
major
3'SS Sequence:
TTTTTACCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
CTTTTTTTACCT
Flanking Amino Acid:
DCKLLIVSNPVDILTYVAWK
Intron Amino Acid Position:
280

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.2
70
40.5
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
87.7
0.85
0.7
82.5
28.1
Minor 5ss
41.2
-1
2.7
53.6
43.5
Minor BPS
67.2
0.62
1.6
82.56
39.6

Associated Gene:

Gene:
LDHA
Ensembl Gene ID:
ENSAPLG00000005918
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006177
34880214 - 34887289
7076