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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34885330_34886194_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34885330 - 34886194
Intron Length:
865

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGGGTG
5'SS Class:
strong_major
3'SS Sequence:
GTGCAATTCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATTAAT
U12 Branch Point Sequence:
GTTAGATTAATC
Flanking Amino Acid:
WIVGEHGDSSVPVWSGVNVA
Intron Amino Acid Position:
338

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
69.6
41.1
Major BPS
74
0.6
1.2
75.9
36.3
Major PPT
66.7
0.38
1
62.2
43.1
Minor 5ss
33
-1.9
3.7
43.3
45.4
Minor BPS
49.6
-0
2
65.23
40.2

Associated Gene:

Gene:
LDHA
Ensembl Gene ID:
ENSAPLG00000005918
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006177
34880214 - 34887289
7076