About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34886313_34886699_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34886313 - 34886699
Intron Length:
387

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTACTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
ATTTTTTTACTC
Flanking Amino Acid:
WKEVHKQVVDSAYEVIKLKG
Intron Amino Acid Position:
377

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
80.4
34.2
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
87.1
0.83
0.7
81.7
29.9
Minor 5ss
34.4
-1.8
2.8
42.8
44
Minor BPS
62.5
0.37
1.5
71.5
34.3

Associated Gene:

Gene:
LDHA
Ensembl Gene ID:
ENSAPLG00000005918
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006177
34880214 - 34887289
7076