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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34886824_34886972_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34886824 - 34886972
Intron Length:
149

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
ACCTACTTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
CTATTCTTACCT
Flanking Amino Acid:
RVHPISTVVKGMHGIKEDVF
Intron Amino Acid Position:
419

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
72.2
39.5
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
77.1
0.61
0.9
73.1
36.3
Minor 5ss
34.3
-1.8
2.9
43
44.2
Minor BPS
66.7
0.6
1.6
80
42.2

Associated Gene:

Gene:
LDHA
Ensembl Gene ID:
ENSAPLG00000005918
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006177
34880214 - 34887289
7076