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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34892766_34897363_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34892766 - 34897363
Intron Length:
4598

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTGTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTAAT
U12 Branch Point Sequence:
TGCTTGTGAATT
Flanking Amino Acid:
YPSQPPVTTVGPSRDGTISE
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
74
36.6
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
87.7
0.85
0.8
84.5
30.4
Minor 5ss
30.8
-2.2
2.6
33.6
35.6
Minor BPS
48.5
-0
2.1
68.72
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006338
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006585
34889394 - 34909913
20520