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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34899389_34901524_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34899389 - 34901524
Intron Length:
2136

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGTGGT
5'SS Class:
major
3'SS Sequence:
TTATTTTGTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
AAATCCTTATTT
Flanking Amino Acid:
PPYQATGPPTTSYVPGMPGG
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
71.7
38.4
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
80.8
0.69
0.9
81.4
36.1
Minor 5ss
36.3
-1.6
3.3
50.8
41.1
Minor BPS
66.2
0.59
1.6
76.78
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006338
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006585
34889394 - 34909913
20520