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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34901652_34902989_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34901652 - 34902989
Intron Length:
1338

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTATCCTCGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
ATTCGTTTATCC
Flanking Amino Acid:
YLPYLHEWKYPQSDLLELIQ
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1.2
87.1
30
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
82.6
0.73
0.8
77.5
31.1
Minor 5ss
40.7
-1
2.8
50.6
39.2
Minor BPS
49.7
-0
2
65.92
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006338
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006585
34889394 - 34909913
20520