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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34903154_34903700_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34903154 - 34903700
Intron Length:
547

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGCTAT
5'SS Class:
strong_major
3'SS Sequence:
AACCTCTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TCTTTCAAAACC
Flanking Amino Acid:
LSGTIPVPYRGNTYNIPICL
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
76.7
34.9
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
73
0.52
0.8
70
35.5
Minor 5ss
55.7
0.19
2.5
72.7
44.5
Minor BPS
54.7
0.13
2
70.45
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006338
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006585
34889394 - 34909913
20520