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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34903154_34905953_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34903154 - 34905953
Intron Length:
2800

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
AACCTCTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TCTTTCAAAACC
Flanking Amino Acid:
RTSNLLWIHMVTPTISQFAC
Intron Amino Acid Position:
379

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
74.5
41.9
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
73
0.52
0.8
70
35.5
Minor 5ss
38
-1.4
3
47.2
42.5
Minor BPS
54.7
0.13
2
70.45
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006338
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006821
34903061 - 34919558
16498