Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34906039_34908879_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

34906039 - 34908879

Intron Length:

2841

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGCGCCG

5'SS Class:

major

3'SS Sequence:

CCTTGTTTTCTAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTATGAT

U12 Branch Point Sequence:

TATGATGTAAAA

Flanking Amino Acid:

ESQLKKMLAKYKYRDLTVQE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

63.1

0.31

1.3

48.8

47.3

Major BPS

84.6

0.86

41.2

Major PPT

80.2

0.68

0.8

72.6

37.6

Minor 5ss

35.2

-1.7

3.5

47.9

47.8

Minor BPS

43.9

-0.4

2.2

58.45

41.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000006338

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006585

34889394 - 34909913

20520