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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34909914_34911133_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34909914 - 34911133
Intron Length:
1220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGGG
5'SS Class:
strong_major
3'SS Sequence:
CATGCTGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
AAATAAATGACA
Flanking Amino Acid:
KVHSVSTLAKGCCNINSEVF
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
69.5
41.5
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
73.3
0.52
1
69
41.5
Minor 5ss
31.4
-2.1
3.2
40.6
45.6
Minor BPS
43.5
-0.5
2
54.15
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006338
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006821
34903061 - 34919558
16498