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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34911258_34911877_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34911258 - 34911877
Intron Length:
620

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGCCA
5'SS Class:
major
3'SS Sequence:
GTGGTTTATATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
TGTGGTTTATAT
Flanking Amino Acid:
AQNSKEQVANRAMEILKGKG
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
65.1
40.5
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
67.5
0.39
1
61.9
43.7
Minor 5ss
31.1
-2.2
3.2
40.1
45.4
Minor BPS
45.3
-0.2
2.1
65.36
45.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006338
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006821
34903061 - 34919558
16498