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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34912677_34913623_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34912677 - 34913623
Intron Length:
947

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGTTGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTCACGCATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
TTTTCTTTCACG
Flanking Amino Acid:
NSVLLVASHPVEVMTYVSWK
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
65.9
42.4
Major BPS
77.7
0.69
1
81
30.2
Major PPT
66.9
0.38
0.9
61.8
33.8
Minor 5ss
33.1
-1.9
3
40.6
45.6
Minor BPS
71.5
0.53
1.8
78.9
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006338
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006821
34903061 - 34919558
16498