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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34915006_34915576_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34915006 - 34915576
Intron Length:
571

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTAAT
5'SS Class:
strong_major
3'SS Sequence:
GTTATTCATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TATTGTTAAACT
Flanking Amino Acid:
IACVLAVAAKGVADKVVLLD
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
88.7
25.1
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
73
0.52
0.9
71.1
39.9
Minor 5ss
43.5
-0.7
2.6
59.2
45.4
Minor BPS
58.5
0.34
2.1
80.6
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006338
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006821
34903061 - 34919558
16498