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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34918357_34919285_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
34918357 - 34919285
Intron Length:
929

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAGTA
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTTGAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TTGTGTTGAACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
76.9
31.6
Major BPS
76.8
0.67
1
66
40.9
Major PPT
69.2
0.43
1.1
65.6
44.4
Minor 5ss
34.2
-1.8
3.5
44.1
44.7
Minor BPS
57.7
0.24
1.9
71.8
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006338
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006821
34903061 - 34919558
16498