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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34936612_34939417_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34936612 - 34939417
Intron Length:
2806

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATTTAAA
5'SS Class:
major
3'SS Sequence:
TTGTTTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
CATTTCTGACAT
Flanking Amino Acid:
ADSSNALIARKRYSLAVGPP
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.1
68.7
37.6
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
85.1
0.79
0.9
80.6
37
Minor 5ss
40.8
-1
2.5
42.1
44.8
Minor BPS
48.4
-0
1.8
66.83
43.6

Associated Gene:

Gene:
SPTY2D1
Ensembl Gene ID:
ENSAPLG00000006866
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042226
34929466 - 34940350
10885