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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34936612_34942649_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34936612 - 34942649
Intron Length:
6038

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGCGCG
5'SS Class:
major
3'SS Sequence:
TTGTTTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
CATTTCTGACAT
Flanking Amino Acid:
SEQQGLNAVPKRYSLAVGPP
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
57.1
42.2
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
85.1
0.79
0.9
80.6
37
Minor 5ss
31.7
-2.1
3.3
39.7
45.8
Minor BPS
48.4
-0
1.8
66.83
43.6

Associated Gene:

Gene:
SPTY2D1
Ensembl Gene ID:
ENSAPLG00000006866
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007125
34929466 - 34942709
13244