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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34988039_34988835_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
34988039 - 34988835
Intron Length:
797

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GGA|GCAGGGCTA
5'SS Class:
weak_major
3'SS Sequence:
AAGCCACACTGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTTAGATTAATG
Flanking Amino Acid:
AVGDAFLIWQDLPAATLPMA
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59
0.21
1.3
58.2
38.9
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
42.9
-0.4
1.6
40.9
37.8
Minor 5ss
23.9
-3
4.3
33.8
43
Minor BPS
51.2
-0.1
2.1
65.3
42.6

Associated Gene:

Gene:
TMEM86A
Ensembl Gene ID:
ENSAPLG00000019960
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029394
34987412 - 34992736
5325