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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_35033023_35036274_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35033023 - 35036274
Intron Length:
3252

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGGCTAC
U12 Branch Point Sequence:
TTTTTCTTTCCT
Flanking Amino Acid:
LRTACQLRLDRGGMIQTCEQ
Intron Amino Acid Position:
495

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
40.1
-0.6
1.2
27.6
34.2
Major PPT
90.3
0.91
0.6
88.3
21.3
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
47.9
-0
3.6
87.49
38.1

Associated Gene:

Gene:
PTPN5
Ensembl Gene ID:
ENSAPLG00000007215
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007505
35032929 - 35089118
56190