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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_35043483_35046855_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35043483 - 35046855
Intron Length:
3373

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGGTG
5'SS Class:
major
3'SS Sequence:
ATATTGCACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGTATTTTATAT
Flanking Amino Acid:
MITNIEEMNEKCTEYWPEEQ
Intron Amino Acid Position:
367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
69.7
40.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
65.3
0.34
1
58.5
41.5
Minor 5ss
32.9
-2
3.6
46.5
48.8
Minor BPS
50.5
0.1
1.7
70.24
40.6

Associated Gene:

Gene:
PTPN5
Ensembl Gene ID:
ENSAPLG00000007215
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007505
35032929 - 35089118
56190