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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_35047549_35052066_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35047549 - 35052066
Intron Length:
4518

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTACACATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAC
U12 Branch Point Sequence:
ATCTCTTTACAC
Flanking Amino Acid:
RKNRYKTILPNPHSRVCLTS
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.8
88.1
25.2
Major BPS
72.8
0.57
1
81
30.3
Major PPT
74.9
0.56
0.9
70.9
39.2
Minor 5ss
42
-0.9
2.8
55.1
35.9
Minor BPS
56.1
0.17
1.7
65.5
40.4

Associated Gene:

Gene:
PTPN5
Ensembl Gene ID:
ENSAPLG00000007215
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007505
35032929 - 35089118
56190