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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_35052152_35053822_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35052152 - 35053822
Intron Length:
1671

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
TTTTTTTGAGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TTTTTTTTGAGC
Flanking Amino Acid:
DPFILQAEFFEIPMNFVDPK
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
76.1
32.8
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
82.7
0.74
0.9
81.7
34.6
Minor 5ss
37.4
-1.4
2.9
51.7
39.2
Minor BPS
65
0.46
1.6
76.51
34.1

Associated Gene:

Gene:
PTPN5
Ensembl Gene ID:
ENSAPLG00000007215
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007505
35032929 - 35089118
56190