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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_35087557_35088992_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
35087557 - 35088992
Intron Length:
1436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTTTC
5'SS Class:
major
3'SS Sequence:
TATGTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTTATG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
76.3
34
Major BPS
100
1.24
0.5
100
0
Major PPT
82.9
0.74
0.8
81.5
35.9
Minor 5ss
47
-0.3
2.8
67.3
37.5
Minor BPS
60.4
0.18
2
72.78
39.8

Associated Gene:

Gene:
PTPN5
Ensembl Gene ID:
ENSAPLG00000007215
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007505
35032929 - 35089118
56190