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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_35241787_35381505_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35241787 - 35381505
Intron Length:
139719

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTATTTCTATCT
Flanking Amino Acid:
MPCCTKTPTAHAMKE
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
87.5
28.9
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
90.3
0.91
0.6
88.3
21.3
Minor 5ss
39.8
-1.1
2.8
52.2
44.4
Minor BPS
53.1
0.17
1.9
76.91
39.7

Associated Gene:

Gene:
OSBPL5
Ensembl Gene ID:
ENSAPLG00000002498
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045617
35241772 - 35441454
199683