Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_35310568_35381505_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

35310568 - 35381505

Intron Length:

70938

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGCAC

5'SS Class:

strong_major

3'SS Sequence:

CTTTCCTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTCTAT

U12 Branch Point Sequence:

TTATTTCTATCT

Flanking Amino Acid:

TARGLGCPGQKTPTAHAMKE

Intron Amino Acid Position:

227

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.3

0.9

38.2

Major BPS

73.8

0.59

1.3

72.8

Major PPT

90.3

0.91

0.6

88.3

21.3

Minor 5ss

-2.2

3.3

45.6

Minor BPS

53.1

0.17

1.9

76.91

39.7

Associated Gene:

Gene:

OSBPL5

Ensembl Gene ID:

ENSAPLG00000002498

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002559

35309890 - 35442454

132565