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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_35429470_35431491_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35429470 - 35431491
Intron Length:
2022

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCCTGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TCTCCCCTGACA
Flanking Amino Acid:
HRAELEFKLKPFFGGSTSIN
Intron Amino Acid Position:
812

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.8
74.6
28.6
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
73
0.52
0.9
68.5
31.9
Minor 5ss
25.3
-2.8
3.2
31.7
42.9
Minor BPS
62
0.37
1.7
73.14
38.3

Associated Gene:

Gene:
OSBPL5
Ensembl Gene ID:
ENSAPLG00000002498
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045617
35241772 - 35441454
199683
ENSAPLT00000002559
35309890 - 35442454
132565