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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_35448941_35449766_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35448941 - 35449766
Intron Length:
826

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGAGAG
U12 Branch Point Sequence:
TTCTCTTCCACA
Flanking Amino Acid:
KGLCCVLCPAGTYVSQHCTT
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
46.1
-0.2
1.6
46.4
47
Major PPT
84.1
0.77
0.7
79.7
25.9
Minor 5ss
37.9
-1.4
3.3
56.5
47.6
Minor BPS
54.8
0.14
2
71.01
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002387
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002395
35447741 - 35453951
6211