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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_35449899_35450095_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
35449899 - 35450095
Intron Length:
197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTACCACAG
5'SS Class:
weak_major
3'SS Sequence:
CTCTTATTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TAATTTTTAACT
Flanking Amino Acid:
ECLLCRQCRDDQITLRACTP
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.1
0.15
1.3
44.9
44.7
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
82.4
0.73
0.7
81.1
29.7
Minor 5ss
36.3
-1.6
3.3
47.9
47.6
Minor BPS
78
0.96
1
85.59
34.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002387
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002395
35447741 - 35453951
6211