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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_35450208_35450794_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35450208 - 35450794
Intron Length:
587

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTTCA
5'SS Class:
major
3'SS Sequence:
CCATCCACTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTGAT
U12 Branch Point Sequence:
GTTGATACAACT
Flanking Amino Acid:
GCEICQRCSKTCPEGKEIVQ
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1.3
77.7
33.5
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
70.9
0.47
0.9
66.7
33.9
Minor 5ss
41.9
-0.9
2.7
49.9
39.7
Minor BPS
45.1
-0.2
2
67.08
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002387
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002395
35447741 - 35453951
6211