Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_35458097_35466896_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

35458097 - 35466896

Intron Length:

8800

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTAAGGCGC

5'SS Class:

major

3'SS Sequence:

GTTTTTTCTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTAAAT

U12 Branch Point Sequence:

TTCTATTTAAAT

Flanking Amino Acid:

MAAAAAEPGKGKRMQPPW

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.1

0.64

1.1

58.8

42.8

Major BPS

82.3

0.8

0.9

87.6

25.7

Major PPT

84.6

0.78

0.7

77.9

36.6

Minor 5ss

30.7

-2.2

3.2

33.6

41.9

Minor BPS

66.5

0.6

1.6

82.06

39.2

Associated Gene:

Gene:

CARS1

Ensembl Gene ID:

ENSAPLG00000015062

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030598

35457080 - 35488245

31166