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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_35466989_35467818_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35466989 - 35467818
Intron Length:
830

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGACTAAA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCAATTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
TCCCTTTCAATT
Flanking Amino Acid:
CLYNSLTRNKEIFQPQNGKK
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1.1
79.3
31.1
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
65.2
0.34
1.1
69
35.1
Minor 5ss
35.1
-1.7
2.7
41.8
44.8
Minor BPS
50.7
0.1
1.5
64.38
41.1

Associated Gene:

Gene:
CARS1
Ensembl Gene ID:
ENSAPLG00000015062
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030598
35457080 - 35488245
31166
ENSAPLT00000020137
35457080 - 35488245
31166
ENSAPLT00000015778
35466911 - 35491015
24105