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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_35467908_35468242_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35467908 - 35468242
Intron Length:
335

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGTAG
5'SS Class:
major
3'SS Sequence:
CTGTTGTTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TAAACACTAATA
Flanking Amino Acid:
VYDASHMGHARSYISFDILR
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.46
1.1
59.6
41.8
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
78.7
0.65
0.9
76.9
37.3
Minor 5ss
35.1
-1.7
3.4
46.5
48.8
Minor BPS
47.8
-0.1
1.9
60.89
38.2

Associated Gene:

Gene:
CARS1
Ensembl Gene ID:
ENSAPLG00000015062
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020137
35457080 - 35488245
31166
ENSAPLT00000015778
35466911 - 35491015
24105
ENSAPLT00000030598
35457080 - 35488245
31166