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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_35468340_35468801_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35468340 - 35468801
Intron Length:
462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGCTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
ATTTCCATATTT
Flanking Amino Acid:
CMNITDIDDKIIKRARQNYL
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.1
39.5
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
81.6
0.71
0.8
77
31.7
Minor 5ss
33.4
-1.9
3.4
48.4
47.3
Minor BPS
62.3
0.46
1.9
83.51
37.5

Associated Gene:

Gene:
CARS1
Ensembl Gene ID:
ENSAPLG00000015062
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020137
35457080 - 35488245
31166
ENSAPLT00000015778
35466911 - 35491015
24105
ENSAPLT00000030598
35457080 - 35488245
31166