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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_35468901_35469915_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35468901 - 35469915
Intron Length:
1015

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGCTCA
5'SS Class:
major
3'SS Sequence:
CTTTTGATTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTGTTTTAAAC
Flanking Amino Acid:
LLEDVKTASELFSVKLNETT
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
68.6
39.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
79.1
0.65
0.9
74.1
35.3
Minor 5ss
42.7
-0.8
3.1
56.5
47.9
Minor BPS
65.8
0.48
1.5
74.65
36.2

Associated Gene:

Gene:
CARS1
Ensembl Gene ID:
ENSAPLG00000015062
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030598
35457080 - 35488245
31166
ENSAPLT00000020137
35457080 - 35488245
31166
ENSAPLT00000015778
35466911 - 35491015
24105