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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_35471172_35471965_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35471172 - 35471965
Intron Length:
794

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TAAGTATAAAAT
Flanking Amino Acid:
EFHKDMEALNVLPPDVLTRV
Intron Amino Acid Position:
219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1.2
83.2
30.8
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
89.1
0.88
0.6
85.8
21.3
Minor 5ss
36.4
-1.5
2.7
41.6
38.3
Minor BPS
43.7
-0.4
2
60.08
42.9

Associated Gene:

Gene:
CARS1
Ensembl Gene ID:
ENSAPLG00000015062
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030598
35457080 - 35488245
31166
ENSAPLT00000020137
35457080 - 35488245
31166
ENSAPLT00000015778
35466911 - 35491015
24105