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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_35472055_35473139_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35472055 - 35473139
Intron Length:
1085

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTAACTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTATTTTTAACT
Flanking Amino Acid:
FVKKIVDNGYGYVSNGSVYF
Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
77.7
33.5
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
84.6
0.78
0.8
81.4
35.8
Minor 5ss
40
-1.1
2.7
42.4
44.3
Minor BPS
83.1
1.12
0.9
92.23
29.9

Associated Gene:

Gene:
CARS1
Ensembl Gene ID:
ENSAPLG00000015062
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030598
35457080 - 35488245
31166
ENSAPLT00000020137
35457080 - 35488245
31166
ENSAPLT00000015778
35466911 - 35491015
24105