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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_35476094_35476402_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
35476094 - 35476402
Intron Length:
309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAATT
5'SS Class:
strong_major
3'SS Sequence:
AAACTCCTAATAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTACTTTAAAA
Flanking Amino Acid:
TIKDALKKHTARQLRLAFLM
Intron Amino Acid Position:
413

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
87
27.5
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
58.3
0.19
1
52.3
36.9
Minor 5ss
38.8
-1.3
3.2
57.6
46.6
Minor BPS
74
0.75
1.3
81.55
33.1

Associated Gene:

Gene:
CARS1
Ensembl Gene ID:
ENSAPLG00000015062
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020137
35457080 - 35488245
31166
ENSAPLT00000015778
35466911 - 35491015
24105
ENSAPLT00000030598
35457080 - 35488245
31166