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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_35476507_35477493_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35476507 - 35477493
Intron Length:
987

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
AGGTTTTGAACT
Flanking Amino Acid:
SAIQYEKFMNEFFLNVKDIL
Intron Amino Acid Position:
448

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
80
34.8
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
83
0.74
0.7
81.8
30.3
Minor 5ss
37.5
-1.4
2.8
47
41.7
Minor BPS
60
0.39
1.4
71.49
39.5

Associated Gene:

Gene:
CARS1
Ensembl Gene ID:
ENSAPLG00000015062
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020137
35457080 - 35488245
31166
ENSAPLT00000015778
35466911 - 35491015
24105
ENSAPLT00000030598
35457080 - 35488245
31166