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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_35477592_35479100_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35477592 - 35479100
Intron Length:
1509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTCTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAA
U12 Branch Point Sequence:
TAAATAGTAAAA
Flanking Amino Acid:
WENQEAELNKNFYDKKAAIH
Intron Amino Acid Position:
480

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
0.9
71.3
34.5
Major BPS
67.4
0.43
1.1
67.9
36.3
Major PPT
88.6
0.87
0.6
89
20.1
Minor 5ss
28.3
-2.5
3.1
31.3
36.7
Minor BPS
41.5
-0.6
2.2
52.67
38.4

Associated Gene:

Gene:
CARS1
Ensembl Gene ID:
ENSAPLG00000015062
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020137
35457080 - 35488245
31166
ENSAPLT00000015778
35466911 - 35491015
24105
ENSAPLT00000030598
35457080 - 35488245
31166