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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_35486631_35486989_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35486631 - 35486989
Intron Length:
359

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCCAAT
5'SS Class:
major
3'SS Sequence:
TTTGCTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
GCATTGGAAACT
Flanking Amino Acid:
ELGVRFEDHEGLPTVVKLVD
Intron Amino Acid Position:
621

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.2
69
43.5
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
87.2
0.84
0.7
85.2
29.6
Minor 5ss
45.5
-0.5
3
66.1
45
Minor BPS
38.4
-0.8
2.6
56.23
46.2

Associated Gene:

Gene:
CARS1
Ensembl Gene ID:
ENSAPLG00000015062
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030598
35457080 - 35488245
31166
ENSAPLT00000020137
35457080 - 35488245
31166
ENSAPLT00000015778
35466911 - 35491015
24105